PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_82DA4DF43.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 65aa    MW: 7846.31 Da    PI: 7.5992
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_82DA4DF43.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.81.1e-102664240
                   FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40
                           fYn+Y+ e GFsvr+s+ +    n +i+ r+fvCs+eg 
  Traes_2DS_82DA4DF43.1 26 FYNKYGLEKGFSVRRSYVEWDXSNXHIILRKFVCSREGV 64
                           *************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-82664IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
VSHESMMEYY HIASKMFNSE DEGYTFYNKY GLEKGFSVRR SYVEWDXSNX HIILRKFVCS  60
REGVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-89HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456168.13e-22hypothetical protein SORBIDRAFT_03g031563, partial
RefseqXP_002462525.14e-22hypothetical protein SORBIDRAFT_02g027384, partial
RefseqXP_010231784.26e-22PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLW5C6E65e-40W5C6E6_WHEAT; Uncharacterized protein
STRINGSb03g031563.19e-22(Sorghum bicolor)
STRINGSb02g027384.11e-21(Sorghum bicolor)
STRINGBRADI2G37795.12e-21(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]